build: update dependency @modelcontextprotocol/sdk to v1.25.3 #2970

Job	Run time
list	33s
workflow (devkit-core-tests)	1m 32s
workflow (modules-builder-tests)	2m 3s
workflow (build-unit-tests)	2m 34s
workflow (build-cli)	1m 48s
workflow (devkit-core-tests-rerun)	1m 32s
	10m 2s

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