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Pull requests: malariagen/malariagen-data-python

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Pull requests list

Fix LoggingHelper.set_level() not updating logger level
#1047 opened Mar 5, 2026 by suhr25 Loading…
Add NON_SYNONYMOUS_START and NON_SYNONYMOUS_STOP effect classifications (fixes #1045)
#1046 opened Mar 5, 2026 by ZiadXI Loading…
1
Fix incorrect type hint for _aim_metadata_dtype
#1043 opened Mar 5, 2026 by vshnvii Loading…
fix: replace assert isinstance(...) statements with proper TypeError exceptions across codebase
#1042 opened Mar 4, 2026 by suhaan-24 Loading…
1
1
fix: migrate _check_types from typeguard to pydantic TypeAdapter (#484)
#1040 opened Mar 4, 2026 by 31puneet Loading…
fix: guard CI variable access in plot_frequencies_time_series and plo…
#1037 opened Mar 4, 2026 by adilraza99 Loading…
1
2
Make pytest functions reproducible (1/2)
#1036 opened Mar 4, 2026 by jwgarber Loading…
1
fix: add pytest-cases note to setup instructions (#1029)te
#1031 opened Mar 3, 2026 by Sally-designs Loading…
2
Fix: Resolve TypeError for None variant in plot_frequencies_map_markers (#725)
#1030 opened Mar 3, 2026 by ArnabTechiee Loading…
test(cnv): stabilise simulated high-variance sampling
#1027 opened Mar 3, 2026 by Sharon-codes Loading…
3
fix(veff): handle single-child transcripts consistently
#1026 opened Mar 3, 2026 by Sharon-codes Loading…
4
feat: add input parameter validation to PlasmodiumDataResource public methods
#1024 opened Mar 2, 2026 by suhaan-24 Loading…
1
1
Fix CNV frequencies halved in gene_cnv_frequencies_advanced with nobs_mode="fixed" (closes #1019)
#1020 opened Mar 2, 2026 by rehanxt5 Loading…
1
fix: prevent axis flipping in plot_h12_calibration by adding bounds
#1018 opened Mar 2, 2026 by joshitha1808 Loading…
1
feat: add generic Manhattan/QQ plotting helpers for association results
#1017 opened Mar 2, 2026 by Sharon-codes Loading…
1
8
feat: add per-cohort downsampling support to PCA
#1015 opened Mar 2, 2026 by Sharon-codes Loading…
1
11
Fix Google Colab dependency conflicts for malariagen_data
#1009 opened Mar 2, 2026 by joshitha1808 Loading…
1
refactor: extract AnophelesIhsAnalysis and add simulated-data tests
#1004 opened Mar 1, 2026 by ritoban23 Loading…
Normalize taxon_by handling to match area_by/period_by in cohort grouping
#997 opened Mar 1, 2026 by shauryam2807 Loading…
1
Add simulated-data tests for karyotype
#991 opened Feb 28, 2026 by ritoban23 Loading…
1
feat: add arc and chord diagrams for haplotype sharing (#457, #458)
#989 opened Feb 28, 2026 by 31puneet Loading…
2
Gh542 separate fst plots
#984 opened Feb 28, 2026 by ritoban23 Loading…
1
fix: resolve KeyError and fragile array slicing in haplotypes_frequencies_advanced()`
#982 opened Feb 28, 2026 by blankirigaya Loading…
fix: enforce bool dtype on pca_fit column in pca()
#981 opened Feb 28, 2026 by blankirigaya Loading…
1
Fix: max_af returns NaN instead of 0.0 when all cohorts excluded
#979 opened Feb 28, 2026 by blankirigaya Loading…
1
1
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